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Hello.
My original workflow created would convert the bcl to fastq and UNZIP the data. this takes up huge amount of space.
so I converted to fastq from bcl and KEPT THE FILES ZIPPED. I am able to use trimmomatic on zipped files.
my question, can I used Tophat, Bowtie, and Cufflinks on zipped data? if so, then I can conserve a lot of memory and improve the efficiency of my workflow.
Thank you
My original workflow created would convert the bcl to fastq and UNZIP the data. this takes up huge amount of space.
so I converted to fastq from bcl and KEPT THE FILES ZIPPED. I am able to use trimmomatic on zipped files.
my question, can I used Tophat, Bowtie, and Cufflinks on zipped data? if so, then I can conserve a lot of memory and improve the efficiency of my workflow.
Thank you
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