Announcement

Collapse
No announcement yet.

Tophat Multi-Thread

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Cole Trapnell
    replied
    This is normal - not all phases of the TopHat run are multi-threaded.

    Leave a comment:


  • ECHo
    replied
    kind of weird...
    now it shows 1200%CPU

    Don't know why?

    Leave a comment:


  • ECHo
    started a topic Tophat Multi-Thread

    Tophat Multi-Thread

    Hi, I've used the following command:
    ./tophat -r 5 -p 12 ../bowtie-0.12.1/indexes/chr21 ../bowtie-0.12.1/TestData/s_1_1_sequence.txt ../bowtie-0.12.1/TestData/s_1_2_sequence.txt

    -p 12 I think it could use up to 12 core/thread processing
    So, I use "top" command to see the system monitor.
    However, the bowtie operation, which is called by tophat uses only 100%CPU.
    Why not approaching 1200%CPU usage?

    Thanks.
Working...
X