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convert gff to embl/genbank

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  • convert gff to embl/genbank

    Dear forum members,
    I want to convert gff file to a genbank or a embl format.
    Please suggest appropriate for it.

    I have Bioperl in my machine.
    Last edited by bio_informatics; 02-06-2014, 11:03 PM.
    Bioinformaticscally calm

  • #2
    You can not convert GFF to GenBank, but you can convert the sequence come from a GFF region to GenBank. You need to write a scipt that is read the GFF file, cut the subsequence and save the results to GenBank format.

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    • #3
      Sorry for mt delay in reply.
      Thank you.
      Originally posted by TiborNagy View Post
      You can not convert GFF to GenBank, but you can convert the sequence come from a GFF region to GenBank. You need to write a scipt that is read the GFF file, cut the subsequence and save the results to GenBank format.
      Bioinformaticscally calm

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      • #4
        http://www.ebi.ac.uk/Tools/sfc/readseq/

        They also have it downloadable (jar file) somewhere.

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        • #5
          That helps.
          Thank you.
          Bioinformaticscally calm

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          • #6
            Originally posted by bastianwur View Post
            http://www.ebi.ac.uk/Tools/sfc/readseq/

            They also have it downloadable (jar file) somewhere.
            I have the annotation result save in .txt format, how can I convert it to the genbank format

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