BLAST 2.2.28+ or later has the option of outputting the species name in the tabular output:
You might also be interested in "blobology" from the Blaxter lab:
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Originally posted by maubp View PostWhat kind of stats? If you just want the top hit, you can tell BLAST to only give you one hit per query.
So, I was wondering if there is any other program out there that I can feed the BlastN results to get the stats. Or if anyone has a script to share that I can use to manipulate the data and extract such results.
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Originally posted by NGS_New_User View PostSO, my question is, can anyone give me an idea on what program I can use to manipulate/analyze the results so that I can look at the stats of the top hits, etc?
My blastn results are in tabular format. Any ideas will be extremely helpful.
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Blastn Results - analysis
Hi Everyone,
I have done some blasting on a draft genome that I assembled de novo(~300,000 contigs) and now I want to analyze the results. I used blastn, and I really want to see what was found in the blast results. Blast2GO doesn't help with this (I believe its because I didn't blastx or blastp)
SO, my question is, can anyone give me an idea on what program I can use to manipulate/analyze the results so that I can look at the stats of the top hits, etc?
My blastn results are in tabular format. Any ideas will be extremely helpful.
Thank you!
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