Hey Don,
If it was I would have done that already but it isn't unfortunately. When using vcf-isec you have to give it more then one file as an argument so it can do the intersection between the files. It cannot be done with a single file.
Nino
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Nino,
Wouldn't it be trival to run vcf-isec +10 rawdata.vcf > cutoff10.vcf then vcf-isec -30 cutoff10.vcf > Trimmed.vcf?
-DonLeave a comment:
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vcf-isec
Hello,
I understand with vcf-isec you can merge samples were you can output positions present in this many (=), this many or more (+), or this many or fewer (-) files. Is there a program out there where I can have a range.
Ex: I have 40 vcf files. I want at least 10 to at most 30. So it would be range of 10-30
I hope I explained this well enough for everyone to understand.
Thanks,
Nino
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