mauve snp output file

[akp1d12]

tools > export > export SNPs

[mmmm]

thank you- I am using GUI on windows (not command line) so is there a way to extract snps???

[sBeier]

There seem to be current versions of Mauve that are released as Snapshots which include a convenient SNPExporter. Check that link for reference:

http://sourceforge.net/p/mauve/mailman/message/31871278/

[TiborNagy]

Mauve does not export snps, but you can get those, if you parse the output file. It is a multiple fasta like file.

[mmmm]

I am using mauve 2.3.1 to align assembled bacterial genomes (but there is no snp file) within the output files (backbone, BBCLOS, guide tree)- any advice please on how to get the SNPs??