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Mapping matrix presance/absance on a phylogenetic tree?

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  • Mapping matrix presance/absance on a phylogenetic tree?

    Do you know of any algorithms that would allow me to map absence and presence of a certain state onto a user generated phylogenetic tree? Thanks!

    Example:

    000110010101?001010001100011010010 H.Sapiens
    000110010101?001010001100011010010 N.leucogenys
    0001100101011001010001100011010010 M.Musculus
    0001100101011001010001100011010010 F.Catus
    0001100101011001010001100011010010 O.aries
    0001100101011001010001100011010010 s.scrofa
    0001100101011001010001100011010010 O.Melanoluca
    0001100101011001010001100011010010 A.platyrhynchos
    0001100101011001010001100011010010 T.guttata
    0001100101011001010001100011010010 A.carolinensis
    0001100101011001010001100011010010 X.tropicalis
    0001100101011001010001100011010010 D.rerio
    0001100101011001010001100011010010 G.aculeatus
    00011001010110010?0001100011010010 O.latipes
    00011001010110010?0001100011010010 O.niloticus
    00011001010110010?0001100011010010 Z.maylandia
    0101111011111100101110111101111011 B.floridae
    111110101111101010101011000111001? S.kowalevskii
    0011101001111000101010110001110011 S.purpuratus
    1111010100100010001000100101101011 B.impatiens
    1101010100100010001000100101101011 A.florea
    110111101111101010111010110111101? A.californica
    ???111101111111010111011110111111? N.vectensis
    11111110111?1010101110110101110111 A.queenslandica
    11111110111?1100101110?11101101111 T.adhreans
    Last edited by atape; 07-10-2014, 09:06 AM.
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