Mapping matrix presance/absance on a phylogenetic tree?

atape

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Join Date: Jul 2013

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Mapping matrix presance/absance on a phylogenetic tree?

07-10-2014, 09:00 AM

Do you know of any algorithms that would allow me to map absence and presence of a certain state onto a user generated phylogenetic tree? Thanks!

Example:

000110010101?001010001100011010010 H.Sapiens
000110010101?001010001100011010010 N.leucogenys
0001100101011001010001100011010010 M.Musculus
0001100101011001010001100011010010 F.Catus
0001100101011001010001100011010010 O.aries
0001100101011001010001100011010010 s.scrofa
0001100101011001010001100011010010 O.Melanoluca
0001100101011001010001100011010010 A.platyrhynchos
0001100101011001010001100011010010 T.guttata
0001100101011001010001100011010010 A.carolinensis
0001100101011001010001100011010010 X.tropicalis
0001100101011001010001100011010010 D.rerio
0001100101011001010001100011010010 G.aculeatus
00011001010110010?0001100011010010 O.latipes
00011001010110010?0001100011010010 O.niloticus
00011001010110010?0001100011010010 Z.maylandia
0101111011111100101110111101111011 B.floridae
111110101111101010101011000111001? S.kowalevskii
0011101001111000101010110001110011 S.purpuratus
1111010100100010001000100101101011 B.impatiens
1101010100100010001000100101101011 A.florea
110111101111101010111010110111101? A.californica
???111101111111010111011110111111? N.vectensis
11111110111?1010101110110101110111 A.queenslandica
11111110111?1100101110?11101101111 T.adhreans

Last edited by atape; 07-10-2014, 09:06 AM.
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