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Alternatives to installing CEGMA yourself
There are many recent threads in which people have reported problems in trying to install and/or run CEGMA. I try to check on these and add comments as time allows, but I thought it worth mentioning that there are many ways you can run CEGMA without having to install it manually.
- CEGMA packages are available for Homebrew, Linuxbrew, and LPM (thanks to Shaun Jackman and Masahiro Kasahara)
- There is a CEGMA iPlant application (thanks to Michael Crusoe)
- There is an Amazon Machine Instance (thanks to Matt MacManes)
- There is a CEGMA docker image (thanks to Rob Syme)
- And there is a Virtual Machine
All our detailed on the CEGMA FAQ:
However you install CEGMA, I strongly suggest that people first try running it with the included sample data before trying to get it to work with your own data.
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