Dear all,
We have currently released a THOR, a HMM based methods, for differential peak calling with replicates.
best regards,
Ivan Costa
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ODIN - A Differential Peak Caller for ChIP-seq data
I am happy to announce the tool ODIN, which our lab is using to analyse ChIP-seq data.
ODIN is an HMM-based approach to detect and analyse differential peaks in pairs of ChIP-seq data. ODIN performs genomic signal processing, peak calling and p-value calculation in an integrated framework.
For further details, please see
http://www.regulatory-genomics.org/odin-2/
or
http://seqanswers.com/wiki/ODIN
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