Header Leaderboard Ad

Collapse

HOMER annotation & GO

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • HOMER annotation & GO

    Hi,
    I have started using HOMER for peaks detection and annotation from illumina chip-seq data and it actually works well.
    But when I try to provide gene expression data using the "-gene" argument or try to obtain GO informations using "-go", no additional information is parsed to the annotation file.
    Does someone already experience this issues or do I make something wrong?

    HOMER is running on cygwin/window7, added to $path and working well.
    typical command line used :

    perl annotatePeaks.pl input.bed hg19 -gene expression_data.txt or
    perl annotatePeaks.pl input.bed hg19 -go /GO_output

    thanks in advance,
    Last edited by gcorre; 12-09-2014, 07:18 AM.

Latest Articles

Collapse

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 05-26-2023, 09:22 AM
0 responses
8 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-24-2023, 09:49 AM
0 responses
9 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-23-2023, 07:14 AM
0 responses
29 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-18-2023, 11:36 AM
0 responses
113 views
0 likes
Last Post seqadmin  
Working...
X