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HOMER annotation & GO
Hi,
I have started using HOMER for peaks detection and annotation from illumina chip-seq data and it actually works well.
But when I try to provide gene expression data using the "-gene" argument or try to obtain GO informations using "-go", no additional information is parsed to the annotation file.
Does someone already experience this issues or do I make something wrong?
HOMER is running on cygwin/window7, added to $path and working well.
typical command line used :
perl annotatePeaks.pl input.bed hg19 -gene expression_data.txt or
perl annotatePeaks.pl input.bed hg19 -go /GO_output
thanks in advance,
I have started using HOMER for peaks detection and annotation from illumina chip-seq data and it actually works well.
But when I try to provide gene expression data using the "-gene" argument or try to obtain GO informations using "-go", no additional information is parsed to the annotation file.
Does someone already experience this issues or do I make something wrong?
HOMER is running on cygwin/window7, added to $path and working well.
typical command line used :
perl annotatePeaks.pl input.bed hg19 -gene expression_data.txt or
perl annotatePeaks.pl input.bed hg19 -go /GO_output
thanks in advance,