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  • bioBob
    replied
    Plot the counts by replicate. Normalized.

    Leave a comment:


  • Gordon Smyth
    replied
    You can get a topTags table for all genes, then look at the ones you are interested in:

    tab <- topTags(mydata, n=Inf)
    i <- tab$GeneID %in% MyGenes
    tab[i,]

    Leave a comment:


  • how to estimate a specific gene expression which is not in the DE list

    Hi,
    I want to see some specific genes expression between 2 groups. But these genes are not significantly different expressed after running edgeR.
    What should I do?

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