Dear all,
I'm trying to run defuse on an sge cluster where defuse was installed and used already by others.
Below is the command I tried:
sge defuse.pl -c /lspans0/config.txt -1 /lspans0/GC011094.R1.fastq -2 /lspans0/GC011094.R2.fastq -o /lspans0/defuse_out/
Do I need to explicitly use the ' -s sge' option?
In some places, people say that you should add the -d parameter (being the source_data_directory).
Is this the case, or should the command work as I tried it? Then I would suspect that there is something wrong with the reference files that are being used.
Thanks for any suggestions,
Lien
I'm trying to run defuse on an sge cluster where defuse was installed and used already by others.
Below is the command I tried:
sge defuse.pl -c /lspans0/config.txt -1 /lspans0/GC011094.R1.fastq -2 /lspans0/GC011094.R2.fastq -o /lspans0/defuse_out/
Do I need to explicitly use the ' -s sge' option?
In some places, people say that you should add the -d parameter (being the source_data_directory).
Is this the case, or should the command work as I tried it? Then I would suspect that there is something wrong with the reference files that are being used.
Thanks for any suggestions,
Lien