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Hi all!
I need some help to select tagSNPs for a human gene. Could you please tell me if I will reach this goal with the following procedure?
My first step is obtaining a list of SNPs for this gene. I found different lists for the same genes on Pubmed, Ensembl, GeneCards and UCSC Genome Browser.
After that I want to somehow create an input file for Haploview out of the selected SNP list, for example with PLINK. Then I simply need to analyze the list with Tagger or create a LD plot.
Is this an appropriate way to identify tagSNPs?
Thank you very much!
I need some help to select tagSNPs for a human gene. Could you please tell me if I will reach this goal with the following procedure?
My first step is obtaining a list of SNPs for this gene. I found different lists for the same genes on Pubmed, Ensembl, GeneCards and UCSC Genome Browser.
After that I want to somehow create an input file for Haploview out of the selected SNP list, for example with PLINK. Then I simply need to analyze the list with Tagger or create a LD plot.
Is this an appropriate way to identify tagSNPs?
Thank you very much!