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Samtools's rmdup vs. Picard's MarkDuplicates

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  • #31
    Thank you, syfo!

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    • #32
      Similar problem

      I was facing a similar problem with rmdup of picard and samtools.
      After performing 'rmdup', picard left `~23,000' reads whereas samtools left me with '~1800' reads only, which is a huge difference.
      Anyhoo, this thread explained a lot... So thank you everyone who has contributed.

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