Mate-pair sequence structural variants

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lre1234

Senior Member

Join Date: Aug 2011

Posts: 108
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Mate-pair sequence structural variants

04-22-2015, 08:59 AM

I was given a mate-pair whole genome dataset that was sequenced on a SOLID 5500xl. I was interested in knowing if anyone has had any experience in doing structural variant calling (CNV, LOH, translocations, etc) with using this kind of data, and what the "best" approach. Or if anyone has done structural varaint calling with mate-pair in general and what they used for it.
Thanks
Tags: mate-pair reads, solid 5500, structrual variation

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