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foxyg

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Join Date: May 2010

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Using BWA with illumina output, do I need to adjust score

06-22-2010, 07:51 AM

Hello, I am trying out BWA. I couldn't find an option in BWA where it let me specify the platform like bowtie did. In bowtie, I could say --Solexal1.3-quals, this will tell bowtie the quality score offset is 64. How can i tell the samething to BWA?

Thanks
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