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  • Daniel Su
    replied
    Originally posted by zee View Post
    Read the samtools manual page at http://samtools.sourceforge.net/samtools.shtml
    Thank you zee.
    By the way, the header section would be absent.
    Last edited by Daniel Su; 06-30-2010, 03:14 AM.

    Leave a comment:


  • zee
    replied
    Read the samtools manual page at http://samtools.sourceforge.net/samtools.shtml

    samtools view in.bam > out.bam

    Leave a comment:


  • thinkRNA
    replied
    Originally posted by lvaruzza View Post
    samtools -b -S in.sam > out.bam
    is this not sam to bam? I want to go the other way (bam to sam). thanks!

    Leave a comment:


  • lvaruzza
    replied
    samtools -b -S in.sam > out.bam

    Leave a comment:


  • thinkRNA
    started a topic convert BAM -> SAM?

    convert BAM -> SAM?

    how can one convert from BAM to SAM
    I can use samtools to go from SAM to BAM but not other way. samtools only outputs BAM format, does anyone know? Thanks in advance!

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