Announcement

Collapse
No announcement yet.

bbduk and kmer masking

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • bbduk and kmer masking

    Using bbduk on Illumina PE hg19 fastq files from NextSeq. I have done adapter removal, quality trimming and contamination filtering. Is kmer masking needed or recommended before I align using bbmap? Thank you .

  • #2
    Originally posted by cmccabe View Post
    Using bbduk on Illumina PE hg19 fastq files from NextSeq. I have done adapter removal, quality trimming and contamination filtering. Is kmer masking needed or recommended before I align using bbmap? Thank you .
    Nope! That's just for special use-cases.

    Comment


    • #3
      Thank you .

      The bbMap tools are amazingly fast and accurate.

      Comment

      Working...
      X