Hi,
I want to have a distribution of number of mismatches in mapped reads from .map file. (how many of mapped reads have 1 mismatch, how may have 2, etc.)
it's a straight forward question, I'm guessing there is a a straight forward answer.
I found pileup and mapcheck, but none of them gives me the information that I need.
can any one help me with this?
Thanks
I want to have a distribution of number of mismatches in mapped reads from .map file. (how many of mapped reads have 1 mismatch, how may have 2, etc.)
it's a straight forward question, I'm guessing there is a a straight forward answer.
I found pileup and mapcheck, but none of them gives me the information that I need.
can any one help me with this?
Thanks
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