Thank you!
OK, now stuck on step 3.....
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Hi, I had exactly the same problem. When I went into the mysql database manually and deleted the tables TEdenovo.py had created (named 'jobs' and 'info_tables' I think) then ran step 2 again it got farther. The mysql query I used was
DROP TABLE jobs;
DROP TABLE info_tables;Leave a comment:
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REPET denovo BLASTER step
Hi,
I am troubleshooting the software REPET https://urgi.versailles.inra.fr/Tools/REPET , and I got to the step 2 of TEdenovo.py analysis:
In
the python script start to work, give you an output folder (DmelChr4_Blaster, with two additional config files), then python is no longer called and it never finish from this terminal output:Code:TEdenovo.py -P DmelChr4 -C TEdenovo.cfg -S 2 -s Blaster
Anyone working with it before and having similar issues. ThanksCode:START TEdenovo.py (2016-06-23 17:21:44) version 2.5 project name = DmelChr4 project directory = /users/work/DmelChr4_TEdenovo beginning of step 2 self-alignment with Blaster The copy option is: True
Last edited by cascoamarillo; 06-24-2016, 06:45 AM.
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