Posting the reply from Novocraft's forum for this thread from zayed
**********
On Tue 14 of Sep., 2010 12:48 MYT, by zayed
OK, it looks as though you may not have built your database index before doing the alignment step.
First ensure that you index your fasta database sequence(s) using novoindex:
./novoindex HIV1.nix HIV1.fas
Now do the alignment as before
./novoalign -F STDFQ -r0.2 -d HIV1.nix -f read1.fq read2.fq > paired.novoalign
***************
And it worked
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Novoalign error message:- Interrupted..11 Obtained 7 stack frames.
Hi,
I receive the following error while aligning paired-end reads using novoalign.
Interrupted..11
Obtained 7 stack frames.
0x400348
0x4003cd
0x43d860
0x40df50
0x400d07
0x4d03f6
0x400239
The command I ran was ./novoalign -F STDFQ -r0.2 -d HIV1.fas -f read1.fq read2.fq > paired.novoalign
If this is an OS/CPU related problem with a fix or if there is anything else I need to check please advise.
P.S - I have posted the same query in Novocraft's forum but since there has not been a reply I decided to post it here as well. Sorry for cross-posting.Tags: None
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