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  • #1

    BFAST mapping quality scores

    Dear all,

    Can anybody tell me what the BFAST mapping scores stand for? I know they go from 0-255 but I wonder how they are computed; and do they have anything to do with the probability of a false positive?
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  • #2
    Originally posted by nora View Post
    Dear all,

    Can anybody tell me what the BFAST mapping scores stand for? I know they go from 0-255 but I wonder how they are computed; and do they have anything to do with the probability of a false positive?
    See the following link for an discussion of how BFAST calculates mapping quality:
    https://sourceforge.net/apps/mediawi...apping_Quality

    See this link (check the supplementary materials) behind the mathematical discussion behind mapping quality:
    http://genome.cshlp.org/content/18/11/1851.abstract

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    • #3
      Thanks so much!

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