Tweet
How to decompress several fastq.gz files and concatenate them into one single .fastq file? There are two kinds of file in the same folder, some ending in ...R2_001.fastq.gz , and others ending in R1_001.fastq.gz. The work is to decompress and concatenate files ending in ...R2_001.fastq.gz into one R2_001.fastq file, and do the same for ...R2_001.fastq.gz files. Really appreciate any help. Thanks -madza
-
-
gunzip decompresses gz files, cat concatenates them, and * is a wildcard. This is all in the Unix command line once you've moved to the directory with the files.
gunzip *R2_001.fastq.gz
cat *R2_001.fastq > combined_R2_001.fastqProviding nextRAD genotyping and PacBio sequencing services. http://snpsaurus.com -
Code:zcat *R2* > concatenated_R2.fastq.gz zcat *R1* > concatenated_R1.fastq.gz
Comment
-
-
Would appreciate if someone with permissions can delete this for me.
Would appreciate if someone with permissions can delete this for me.
Didn't know crossposting was a prob. Thanks. -madzaComment
-
The recent pandemic caused worldwide health, economic, and social disruptions with its reverberations still felt today. A key takeaway from this event is the need for accurate and accessible tools for detecting and tracking infectious diseases. Timely identification is essential for early intervention, managing outbreaks, and preventing their spread. This article reviews several valuable tools employed in the detection and surveillance of infectious diseases.
...11-27-2023, 01:15 PM -
Microbiome research has led to the discovery of important connections to human and environmental health. Sequencing has become a core investigational tool in microbiome research, a subject that we covered during a recent webinar. Our expert speakers shared a number of advancements including improved experimental workflows, research involving transmission dynamics, and invaluable analysis resources. This article recaps their informative presentations, offering insights...11-09-2023, 07:02 AM
Comment