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  • VirusDetect - new tool for virus discovery using deep sequencing small RNAs

    We developed a new tool for virus detection using deep sequencing small RNAs. It works with both small RNA and RNA-seq data.

    Compared to other tools, we extract all viruses from GenBank, and remove redundant virus sequences to speed up the known virus identification. Besides, the novel virus (without sequence similarity to any known viruses) could be identified based on siRNA profile when using deep sequencing small RNAs.

    We also provide an online version for windows users, and the output the identification result in html page for easy to view.

Latest Articles

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  • seqadmin
    Exploring the Dynamics of the Tumor Microenvironment
    by seqadmin




    The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...
    07-08-2024, 03:19 PM
  • seqadmin
    Exploring Human Diversity Through Large-Scale Omics
    by seqadmin


    In 2003, researchers from the Human Genome Project (HGP) announced the most comprehensive genome to date1. Although the genome wasn’t fully completed until nearly 20 years later2, numerous large-scale projects, such as the International HapMap Project and 1000 Genomes Project, continued the HGP's work, capturing extensive variation and genomic diversity within humans. Recently, newer initiatives have significantly increased in scale and expanded beyond genomics, offering a more detailed...
    06-25-2024, 06:43 AM

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