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Cheers Sven,
That looks like a great resource!
Dan.
That looks like a great resource!
Dan.
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hi, you can try the following,
usage: $0 [options] -l libraryname -s seq.fasta -q qlt.fasta > new.frg
-v vector-clear-file A file of 'readUID vecBeg vecEnd', one per line, that is the vector clear range.
-noobt Set the 'doNotOverlapTrim' library feature.
-454 Set library features appropriate for 454 reads (see also sffToCA).
-idregex pattern Use this perl regex to extract the read name from the seq defline.
-l libraryname Name of the library; freeformat text.
-mean m Insert has mean size of m.
-stddev s Insert has std dev of s.
-s seq Fasta file of sequences.
-q qual Fasta file of quality values.
-m matepairing A file of pairs of read UIDs for mated reads, one pair per line, whitespace separatedComment
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Probably,
taken from resource mentioned above ..Code:convert-fasta-to-v2.pl
cheers,
SvenComment
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[QUOTE=bio-x;6068]
usage: $0 [options] -l libraryname -s seq.fasta -q qlt.fasta > new.frg
can someone give me a complete exampe to run this command.Comment
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