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Dear community,
i am using interproscan to find the domains within my proteins. i ran the software without any error message. However, the job seems to last forever although my input file only contains 40 proteins. After using the command:
[/code]
java -Xmx40048M -jar interproscan-5.jar -i biofilmGenes_prot.fasta -u /home/salvo/interproscan-5.27-66.0/ -d biofilmProteins -cpu 4
[/code]
i get the following output:
21/12/2017 11:35:23:424 Welcome to InterProScan-5.27-66.0
21/12/2017 11:35:29:946 Running InterProScan v5 in STANDALONE mode... on Linux
21/12/2017 11:35:49:769 Loading file /home/salvo/interproscan-5.27-66.0//biofilmGenes_prot.fasta
21/12/2017 11:35:49:771 Running the following analyses:
[CDD-3.16,Coils-2.2.1,Gene3D-4.1.0,Hamap-2017_10,MobiDBLite-1.0,Pfam-31.0,PIRSF-3.02,PRINTS-42.0,ProDom-2006.1,ProSitePatterns-2017_09,ProSiteProfiles-2017_09,SFLD-3,SMART-7.1,SUPERFAMILY-1.75,TIGRFAM-15.0]
Available matches will be retrieved from the pre-calculated match lookup service.
Matches for any sequences that are not represented in the lookup service will be calculated locally.
21/12/2017 11:36:46:215 25% completed
21/12/2017 11:37:23:091 50% completed
21/12/2017 11:38:26:331 77% completed
the software is still running after almost 10 days. have I done something wrong?
thanks for your support
s
i am using interproscan to find the domains within my proteins. i ran the software without any error message. However, the job seems to last forever although my input file only contains 40 proteins. After using the command:
[/code]
java -Xmx40048M -jar interproscan-5.jar -i biofilmGenes_prot.fasta -u /home/salvo/interproscan-5.27-66.0/ -d biofilmProteins -cpu 4
[/code]
i get the following output:
21/12/2017 11:35:23:424 Welcome to InterProScan-5.27-66.0
21/12/2017 11:35:29:946 Running InterProScan v5 in STANDALONE mode... on Linux
21/12/2017 11:35:49:769 Loading file /home/salvo/interproscan-5.27-66.0//biofilmGenes_prot.fasta
21/12/2017 11:35:49:771 Running the following analyses:
[CDD-3.16,Coils-2.2.1,Gene3D-4.1.0,Hamap-2017_10,MobiDBLite-1.0,Pfam-31.0,PIRSF-3.02,PRINTS-42.0,ProDom-2006.1,ProSitePatterns-2017_09,ProSiteProfiles-2017_09,SFLD-3,SMART-7.1,SUPERFAMILY-1.75,TIGRFAM-15.0]
Available matches will be retrieved from the pre-calculated match lookup service.
Matches for any sequences that are not represented in the lookup service will be calculated locally.
21/12/2017 11:36:46:215 25% completed
21/12/2017 11:37:23:091 50% completed
21/12/2017 11:38:26:331 77% completed
the software is still running after almost 10 days. have I done something wrong?
thanks for your support
s