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  • chusyuancheng
    started a topic plink

    plink

    hello everyone:
    I am new to plink.
    as I open the plink, it immediately run all of the lines I pasted below, and then I can't type anything after the [Process completed].
    How do I fix it ? thanks!

    my environment is macOS High Sierra version10.13.4



    Last login: Wed Apr 4 14:50:53 on ttys000
    /Users/chengchusyuan/Downloads/plink-1.07-mac-intel/plink ; exit;
    chengchusyuandeMacBook-Air:~ chengchusyuan$ /Users/chengchusyuan/Downloads/plink-1.07-mac-intel/plink ; exit;

    @----------------------------------------------------------@
    | PLINK! | v1.07 | 10/Aug/2009 |
    |----------------------------------------------------------|
    | (C) 2009 Shaun Purcell, GNU General Public License, v2 |
    |----------------------------------------------------------|
    | For documentation, citation & bug-report instructions: |
    | http://pngu.mgh.harvard.edu/purcell/plink/ |
    @----------------------------------------------------------@

    Web-based version check ( --noweb to skip )
    Recent cached web-check found...Problem connecting to web

    Writing this text to log file [ plink.log ]
    Analysis started: Wed Apr 4 14:54:24 2018

    Options in effect:

    Before frequency and genotyping pruning, there are 0 SNPs
    0 founders and 0 non-founders found
    0 SNPs failed missingness test ( GENO > 1 )
    0 SNPs failed frequency test ( MAF < 0 )
    After frequency and genotyping pruning, there are 0 SNPs

    ERROR: Stopping as there are no SNPs left for analysis

    logout
    Saving session...
    ...copying shared history...
    ...saving history...truncating history files...
    ...completed.

    [Process completed]

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