Header Leaderboard Ad

Collapse

Paired- and Single-End Library on SoapDenovo-Trans

Collapse

Announcement

Collapse

SEQanswers June Challenge Has Begun!

The competition has begun! We're giving away a $50 Amazon gift card to the member who answers the most questions on our site during the month. We want to encourage our community members to share their knowledge and help each other out by answering questions related to sequencing technologies, genomics, and bioinformatics. The competition is open to all members of the site, and the winner will be announced at the beginning of July. Best of luck!

For a list of the official rules, visit (https://www.seqanswers.com/forum/sit...wledge-and-win)
See more
See less
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Paired- and Single-End Library on SoapDenovo-Trans

    Hello everyone.

    I'm trying to assemble a transcriptome with different assembly programs and with different k-mer sizes.
    I've got both single- and paired-end reads and, to my understanding, both Velvet and Trinity can perform the assembly with this kind of libraries.

    Velvet:


    Trinity: concatenating the single-end reads to the R1 of the paired reads.

    Does anybody knows how to proceed with this kind of assembly in SoapDenovo-trans? There is some information about Soapdenovo2 in the same page where the Velvet information is found, but I don't know if it would be applicable for the -Trans version.

    Thank you for your time.
    Last edited by Apodemus; 04-04-2018, 02:42 AM.

Latest Articles

Collapse

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Today, 01:08 PM
0 responses
5 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-01-2023, 08:56 PM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-01-2023, 07:33 AM
0 responses
89 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-31-2023, 07:50 AM
0 responses
130 views
0 likes
Last Post seqadmin  
Working...
X