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How should I interpret the TMHMM/TMpret outputs?

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  • tangaheck
    started a topic How should I interpret the TMHMM/TMpret outputs?

    How should I interpret the TMHMM/TMpret outputs?

    So I search for transmembrane helices in the protein SEC61.
    TMHMM resulted in 5 transmembrane helices and TMpret in 10. (See the outputs in the links)

    How should I interpret the results? According to Uniprot there are 10 TMH.
    Which one should I trust?

    Thanks!

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