Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • 3'utr

    Hi,

    Where can I find the 3'UTR sequences of all the genes of the human ?

    Thanks a lot,

    N.

  • #2
    try this: UCSC table browser, human genome, refseq/ensembl/ucsc annotation track, select "BED" output format and after clicking on "get output" click on 3'UTR.

    Comment


    • #3
      Hi,
      you can also try and use Ensembl and BioMart:

      or http://www.biomart.org/

      In brief,
      first select "Ensembl genes 60" as your database and then Homo Sapiens as your organism.
      Second, since you are trying to export a lot of data it is better to export them chromosome by chromosome. Just select Filters (top left), then "Region" and the chromosome you want.
      Third, under "Attributes" (top left) select "Sequences", click "+" to open the sequences available and select "3'UTR".
      Then click "Results" and export to compressed file.

      BioMart is handy for any batch queries and you can find more about BioMart here:


      Ensembl helpdesk

      Comment


      • #4
        Originally posted by NicoBxl View Post
        Where can I find the 3'UTR sequences of all the genes of the human ?
        Try http://utrdb.ba.itb.cnr.it/ :: Download :: Flat file :: HUMAN :: 3'UTR

        Comment


        • #5
          Originally posted by NicoBxl View Post
          Where can I find the 3'UTR sequences of all the genes of the human ?
          At the end of the genes, after the stop codon.

          Comment


          • #6
            Originally posted by steven View Post
            At the end of the genes, after the stop codon.
            Sorry, i couldn't help it.
            Anyway, you should be fine with the previous answers -let me know otherwise.

            Comment


            • #7
              Originally posted by steven View Post
              At the end of the genes, after the stop codon.
              lol... I think you can also use BioMart to get these.
              Homepage: Dan Bolser
              MetaBase the database of biological databases.

              Comment

              Latest Articles

              Collapse

              • seqadmin
                Current Approaches to Protein Sequencing
                by seqadmin


                Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
                04-04-2024, 04:25 PM
              • seqadmin
                Strategies for Sequencing Challenging Samples
                by seqadmin


                Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
                03-22-2024, 06:39 AM

              ad_right_rmr

              Collapse

              News

              Collapse

              Topics Statistics Last Post
              Started by seqadmin, 04-11-2024, 12:08 PM
              0 responses
              32 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 04-10-2024, 10:19 PM
              0 responses
              37 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 04-10-2024, 09:21 AM
              0 responses
              31 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 04-04-2024, 09:00 AM
              0 responses
              53 views
              0 likes
              Last Post seqadmin  
              Working...
              X