Repeatscout output

fripeki

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Join Date: Apr 2019

Posts: 5
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Repeatscout output

04-24-2019, 07:45 AM

Hello, I have mygenome.fa and I used repeatscout to produce mygenome_repeats and then I filtered it. Now I have mygenome_repeats_filtered.fa. what is the next step? I use repeatmasker using this mygenome_repeats_filtered.fa with mygenome, but repeatmasker didn't find any TE. What is the input in -lib? I have installed repbase from girinst.
Thank you
Tags: masking, transposable element, transposon

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