can I transform .tmap to .gtf/.gff?

sLee1024

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Join Date: Apr 2019

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can I transform .tmap to .gtf/.gff?

04-24-2019, 10:19 PM

Hello everyone,

Currently I am trying to identify novel lncRNAs. I just used cuffCompare and generate several files including .tmap file. After I used several thresholds to filter .tmap file I got a new .tmap file. The next step I wanna do is to extract CDS from reference fasta file according to the filtered gtf file. Is there some way that I can transform the .tmap file I filtered to gtf file?
Tags: cuffcompare, gffread, rna-seq analysis

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