Glimmer HMM

elaventhan

Junior Member

Join Date: Apr 2019

Posts: 1
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Glimmer HMM

04-28-2019, 05:57 AM

Hi,

I usually do Gene Predictions(Oryza sativa) in online tools like GENSCAN, FGENESH, but my PI wanted me to search for other tools. I did try GlimmerHMM-Gene Splicer but I can't able get the methods from the tutorial. . . Can anybody help me in that. . . How to run the trainGlimmerrHMM????. . . I did look for other tutorials too but I couldn't get
Tags: gene prediction, glimmerhmm, tutorial

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Differential Expression and Data Visualization: Recommended Tools for Next-Level Sequencing Analysis

by seqadmin

After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...
- Channel: Articles
05-23-2023, 12:26 PM
Variant Analysis and Genome Assembly: Recommended Tools for Next-Level Sequencing Analysis

by seqadmin

Continuing from our previous article, we share variant analysis and genome assembly tools recommended by our experts Dr. Medhat Mahmoud, Postdoctoral Research Fellow at Baylor College of Medicine, and Dr. Ming "Tommy" Tang, Director of Computational Biology at Immunitas and author of From Cell Line to Command Line.

Variant detection and analysis tools
Mahmoud classifies variant detection work into two main groups: short variants (<50...
- Channel: Articles
05-19-2023, 10:03 AM
QC, Alignment, and Mapping: Recommended Tools for Next-Level Sequencing Analysis

by seqadmin

With new tools and computational resources being released regularly, it can be hard to determine which are best suited for the analysis process and which older tools continue to be maintained. In an effort to assist the sequencing community, we interviewed three highly skilled bioinformaticians about their recommended tools for several important analysis applications.

Quality control and preprocessing tools
“Garbage in, garbage out” is a popular...
- Channel: Articles
05-16-2023, 10:11 AM

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