Hello,
I'm trying to use tabix on a bed file and it seems that tabix is unable to parse my file.
Here is my file :
my commands are :
$ bgzip example_sort.bed
$ tabix -p bed example_sort.bed.gz
and the outputs are :
Any ideas would be appreciated!
Thanks
Aubin
I'm trying to use tabix on a bed file and it seems that tabix is unable to parse my file.
Here is my file :
Code:
chr7 1000 5000 name1 1 + chr7 15000 25000 name3 4 + chr7 35000 75000 name4 8 + chr7 57373 987412 name5 16 -
$ bgzip example_sort.bed
$ tabix -p bed example_sort.bed.gz
and the outputs are :
Code:
[E::get_intv] failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "chr7 1000 5000 name1 1 +" [E::get_intv] failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "chr7 15000 25000 name3 4 +" [E::hts_idx_push] Unsorted positions on sequence #4653157: 1 followed by 0 tbx_index_build failed: example_sort.bed.gz
Any ideas would be appreciated!
Thanks
Aubin
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