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makeBigWig.pl

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  • makeBigWig.pl

    Hello, I

    I tried to use makeBigWig.pl

    Acutally, bedGraphToBigWig has installed.

    Thanks for any help!

    Yue


    [email protected]:~/homer_01/bin$ perl makeBigWig.pl PU.1-ChIP-Seq/ mm9 -webDir /var/www/bigWigs/ -url http://ChuckNorrisU.edu/bigWigs

    !!! Could not detect bedGraphToBigWig program in the executable path !!!
    Download it from http://hgdownload.cse.ucsc.edu/admin/exe/

    [email protected]:~/homer_01/bin$ ./bedGraphToBigWig
    bedGraphToBigWig v 4 - Convert a bedGraph file to bigWig format.
    usage:
    bedGraphToBigWig in.bedGraph chrom.sizes out.bw

  • #2
    The error says it all "could not find bedGraphToBigWig".

    Have a read about Linux and PATH and and or install/configure this program properly in your PATH.

    Else try deeptools via bioconda, it's likely to work better.

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    • #3
      Hello, Colindaven,

      Thank you so much for your great help!

      Best,

      Yue

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