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Hi all,
The Picard tool 'HsMetrics' collects metrics on hybrid selection. One of the colums in the output is 'NEAR_BAIT_BASES', defined as "The number of PF aligned bases that mapped to within a fixed interval of a baited region, but not on a baited region."
Does anyone know how many bases the 'fixed interval' is?
Source code of Picard 1.25 (we currently use 1.32) suggests this interval is 250 (the static NEAR_BAIT_DISTANCE attribute). Is this the number I'm looking for, or is my question waaaaaay too straightforward?
Cheers
The Picard tool 'HsMetrics' collects metrics on hybrid selection. One of the colums in the output is 'NEAR_BAIT_BASES', defined as "The number of PF aligned bases that mapped to within a fixed interval of a baited region, but not on a baited region."
Does anyone know how many bases the 'fixed interval' is?
Source code of Picard 1.25 (we currently use 1.32) suggests this interval is 250 (the static NEAR_BAIT_DISTANCE attribute). Is this the number I'm looking for, or is my question waaaaaay too straightforward?
Cheers