Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Molecular timetable method tools for circadian gene expression?

    Hello, good morning to everyone! As I stated in my previous question, I'm working on a time-point experiment about circadian gene expression in plants. You can find further details about the logic behind the experimental design in the thread I linked in the previous sentence. So, I looked the topic up in scientific literature and it looks as if the dominant method to analyze such kind of data is a logic named 'Molecular Timetable Method', first used back in 2004 on mice, but late adapted and used again on plants like in this article about tomato gene expression, which isn't the only one.

    However, while looking for specific bioinformatics methods (R packages, scripts, tools, etc), I was unable to find algorythms (JTK_Cycle, ABSR, GeneCycle, Circwave, RAIN etc), stating OPENLY they relied on this kind of approach.

    The articles themselves just describe the method and never expand on the bioinformatic tool (if any!) used to perform the analysis.

    I wonder if any of you has any experience in the field and can help me here to find a nice Molecular Timetable based tool to perform circadian gene expression analysis!

    Thank you in advance!

Latest Articles

Collapse

  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    06-06-2024, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 07:23 AM
0 responses
8 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-17-2024, 06:54 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-14-2024, 07:24 AM
0 responses
24 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-13-2024, 08:58 AM
0 responses
18 views
0 likes
Last Post seqadmin  
Working...
X