Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Promoter sequence

    Hi,

    Where can I find the promoter sequence of all the gene of an organism (in this case Bos Taurus) ?

    Thanks,

    N.

  • #2
    Hi Nico

    Try http://rsat.ulb.ac.be/rsat/, alot of differenet tools there.
    I think there is a tool called something like "retrieve ensembl seq." where you can define the regions you wish to retrieve. Also Bos Taurus


    All the best
    Morten

    Comment


    • #3
      Galaxy should be another option. You can get data from various servers.
      Galaxy is a community-driven web-based analysis platform for life science research.

      Comment


      • #4
        Just to add to the list - I'd normally use BioMart to extract this kind of data.

        http://www.ensembl.org/biomart/martview/

        Comment


        • #5
          Ok for biomart,

          But I do not see where is the option for the promoter attribute ?

          Comment


          • #6
            Originally posted by NicoBxl View Post
            Ok for biomart,

            But I do not see where is the option for the promoter attribute ?
            If you skip the filtering step all together (so you get information on all genes), and then select "Attributes". From there you can select "Sequences" from the radio button at the top, you can then select "Flank (Transcript)", and then you can specify how far back from the TSS you want your promoter sequence to extend.

            Comment

            Latest Articles

            Collapse

            • seqadmin
              Strategies for Sequencing Challenging Samples
              by seqadmin


              Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
              03-22-2024, 06:39 AM
            • seqadmin
              Techniques and Challenges in Conservation Genomics
              by seqadmin



              The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

              Avian Conservation
              Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
              03-08-2024, 10:41 AM

            ad_right_rmr

            Collapse

            News

            Collapse

            Topics Statistics Last Post
            Started by seqadmin, Yesterday, 06:37 PM
            0 responses
            8 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, Yesterday, 06:07 PM
            0 responses
            8 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 03-22-2024, 10:03 AM
            0 responses
            49 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 03-21-2024, 07:32 AM
            0 responses
            67 views
            0 likes
            Last Post seqadmin  
            Working...
            X