YASRA (Yet Another Short Read Assembler)

[HereBeDragons]

Hello all,

Can anyone give me some idea of what the command line for a YASRA assembly of illumina paired end reads would look like? I have just started out using it and the readme file couldn't be more confusing to me. Short of knowing that I'll need a lastz alignment as input I have no idea what this file is talking about.

thanks!

[HereBeDragons]

Any input would be helpful, Im just starting out with it.

[liston]

My lab has been using YASRA to assemble plastomes, and Zach Foster wrote Python scripts for submitting and post-processing YASRA runs. There is a link to the scripts, as well as Aakrosh Ratan's dissertation (where he describes YASRA in detail) at:

http://openwetware.org/wiki/Short_read_toolbox

[HereBeDragons]

Thank you, this is very helpful!

[HereBeDragons]

Updated python...