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Hello, I have installed python 3.9.1 and indeed this is confirmed in the terminal when looking to the version. However when launching Biopython I get the message "Biopython requires Python 3.6 or later. Python 2.7 detected." How is this possible? What to do? Thanks.
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Python is generally symlinked to python v.2.x. Can you explicitly try `python3`? -
New python versions usually break a lot of modules, especially low-level ones like pyinstaller and cffi. I usually wait for a revision or two before upgrading to let module maintainers catch up. Waiting also lets the PSF fix any bugs and security holes that are bound to be lurking somewhere.Last edited by AlexPhilip; 12-09-2021, 07:10 AM.Comment
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The old version is better!Comment
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Differential Expression and Data Visualization: Recommended Tools for Next-Level Sequencing Analysis
After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...05-23-2023, 12:26 PM -
Continuing from our previous article, we share variant analysis and genome assembly tools recommended by our experts Dr. Medhat Mahmoud, Postdoctoral Research Fellow at Baylor College of Medicine, and Dr. Ming "Tommy" Tang, Director of Computational Biology at Immunitas and author of From Cell Line to Command Line.
Variant detection and analysis tools
Mahmoud classifies variant detection work into two main groups: short variants (<50...05-19-2023, 10:03 AM -
With new tools and computational resources being released regularly, it can be hard to determine which are best suited for the analysis process and which older tools continue to be maintained. In an effort to assist the sequencing community, we interviewed three highly skilled bioinformaticians about their recommended tools for several important analysis applications.
Quality control and preprocessing tools
“Garbage in, garbage out” is a popular...05-16-2023, 10:11 AM
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