Take a look at the human/mouse ChIP database, which was recently published in Bioinformatics.
-
NCBI GEO - There's gotta be a better way
The amount of ChIP-seq data is piling up and the most common place people dump their published data seems to be NCBI GEO. It just seems to me to be the wrong way to do it. GEO wasn't built for ChIP-seq. First you have to download the data, then if you want to view it on UCSC you have to upload it there. But that is often easier said then done as much of the data is not in a form that will upload onto UCSC or any other genome visualizer for that matter.
Wouldn't it be nice if there was a database where you could just take a quick look into someone's published data like you can with UCSC tracks?
Shouldn't people make a file of called peaks so others don't have to rerun their data through a peak calling program?
What's the solution? I don't know. I'm a biologist but there's got to be a better way. Is anybody working on this?
-
Innovations in next-generation sequencing technologies and techniques are driving more precise and comprehensive exploration of complex biological systems. Current advancements include improved accessibility for long-read sequencing and significant progress in single-cell and 3D genomics. This article explores some of the most impactful developments in the field over the past year.
Long-Read Sequencing
Long-read sequencing has...12-02-2024, 01:49 PM -
The field of immunogenetics explores how genetic variations influence immune responses and susceptibility to disease. In a recent SEQanswers webinar, Oscar Rodriguez, Ph.D., Postdoctoral Researcher at the University of Louisville, and Ruben MartÃnez Barricarte, Ph.D., Assistant Professor of Medicine at Vanderbilt University, shared recent advancements in immunogenetics. This article discusses their research on genetic variation in antibody loci, antibody production processes,...11-06-2024, 07:24 PM
Leave a comment: