Here is a different script to do the same:
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Sorry for bumping this 4 years old thread. I tried to get the code for gvf2vcf.pl, but the link is broken. Is there another link to get the code?
Thanks,
Ying
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The 1000 Genomes project does not distrubute any data in GVF format
You can get the pilot snps on GRCh37 in GVF format from Ensembl
ftp://ftp.ensembl.org/pub/release-62.../homo_sapiens/
For how to convert between the 2 formats I would suggest writing something your self using the description here
as I don't think anyone else has written a converter yet
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1000 Genomes GVF Format
Does anyone know the link to download 1000 Genomes human SNPs in GVF format?
I can only find VCF format and am clueless on converting it to GVF.Tags: None
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