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  • A list of available sequence annotation tools?

    Hi, in reply to a thread here: http://seqanswers.com/forums/showthread.php?t=819 I think it would be great to share tools for annotation of assembled genomes. I have a particular interest in bacteria, but why not make a list of all available tools.

    For bacteria I have tried the Manatee annotation service at JCVI:
    Your requested page /cms/research/projects/annotation-service/overview/ could not be found.


    Another tool which I do not have much experience with is The SEED:


    Suggestion from RudyS: http://www.blast2go.org/

    I would greatly appreciate all the links you can provide!
    Last edited by Stegger; 03-04-2009, 02:23 AM.

  • #2
    new! International Society for Biocuration

    For rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at

    Die EML European Media Laboratory GmbH ist ein Unternehmen, das forschungsnahe IT-Dienstleistungen von der Auftragsforschung über die Entwicklung innovativer IT-Lösungen bis hin zu Beratung und Schulung anbietet. Im Zentrum unserer Arbeit steht der Mensch: IT-Systeme sollen so entworfen und realisiert werden, dass ihre Benutzer sie als hilfreiche Erweiterungen ihrer eigenen Fähigkeiten erleben und nicht als technische Barrieren.


    and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.

    Comment


    • #3
      Originally posted by Joann View Post
      For rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at

      Die EML European Media Laboratory GmbH ist ein Unternehmen, das forschungsnahe IT-Dienstleistungen von der Auftragsforschung über die Entwicklung innovativer IT-Lösungen bis hin zu Beratung und Schulung anbietet. Im Zentrum unserer Arbeit steht der Mensch: IT-Systeme sollen so entworfen und realisiert werden, dass ihre Benutzer sie als hilfreiche Erweiterungen ihrer eigenen Fähigkeiten erleben und nicht als technische Barrieren.


      and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.
      very useful Information for me
      thanks

      Comment


      • #4
        A new tool released recently ~March 2012 is Mitofy http://dogma.ccbb.utexas.edu/mitofy/ for annotation of plant mitochondrial genomes.
        And of course the corresponding tool for plastid genomes that has been available for a while is Dogma http://dogma.ccbb.utexas.edu/

        Comment

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