Header Leaderboard Ad

Collapse

DNA Methylation Data Analysis Workshop in Berlin (27-30 November 2018)

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • DNA Methylation Data Analysis Workshop in Berlin (27-30 November 2018)



    How to use bisulfite-treated sequencing to study DNA methylation
    Advance your epigenetics research with NGS methods.

    Link to workshop website

    In a nutshell
    • Learn how bisulfite sequencing works
    • Understand how bisulfite-treated reads are mapped to a reference genome
    • Perform basic analyses (call methylated regions, perform basic downstream analyses)
    • Use shell scripting to create reusable data pipelines
    • Visualize results (ready-to-publish)


    The purpose of this workshop is to get a deeper understanding of the use of bisulfite-treated DNA in order to analyze the epigenetic layer of DNA methylation. Advantages and disadvantages of the so-called 'bisulfite sequencing' and its implications on data analyses will be covered. The participants will be trained to understand bisulfite-treated NGS data, to detect potential problems/errors and finally to implement their own pipelines. After this course they will be able to analyze DNA methylation and create ready-to-publish graphics.

    By the end of this workshop the participants will:
    • be familiar with the sequencing method of Illumina
    • understand how bisulfite sequencing works
    • be aware of the mapping problem of bisulfite-treated data
    • understand how bisulfite-treated reads are mapped to a reference genome
    • be familiar with common data formats and standards
    • know relevant tools for data processing
    • automate tasks with shell scripting to create reusable data pipelines
    • perform basic analyses (call methylated regions, perform basic downstream analyses)
    • plot and visualize results (ready-to-publish)
    • be able to reuse all analyses


    More information here
    Last edited by ecSeq Bioinformatics; 09-16-2020, 07:59 AM.
    ecSeq Bioinformatics is Europe’s leading provider of hands-on bioinformatics workshops and professional data analysis in the field of Next-Generation Sequencing (NGS).

  • #2
    :: Final Call ::
    ecSeq Bioinformatics is Europe’s leading provider of hands-on bioinformatics workshops and professional data analysis in the field of Next-Generation Sequencing (NGS).

    Comment

    Latest Articles

    Collapse

    • seqadmin
      A Brief Overview and Common Challenges in Single-cell Sequencing Analysis
      by seqadmin


      ​​​​​​The introduction of single-cell sequencing has advanced the ability to study cell-to-cell heterogeneity. Its use has improved our understanding of somatic mutations1, cell lineages2, cellular diversity and regulation3, and development in multicellular organisms4. Single-cell sequencing encompasses hundreds of techniques with different approaches to studying the genomes, transcriptomes, epigenomes, and other omics of individual cells. The analysis of single-cell sequencing data i...

      01-24-2023, 01:19 PM
    • seqadmin
      Introduction to Single-Cell Sequencing
      by seqadmin
      Single-cell sequencing is a technique used to investigate the genome, transcriptome, epigenome, and other omics of individual cells using high-throughput sequencing. This technology has provided many scientific breakthroughs and continues to be applied across many fields, including microbiology, oncology, immunology, neurobiology, precision medicine, and stem cell research.

      The advancement of single-cell sequencing began in 2009 when Tang et al. investigated the single-cell transcriptomes
      ...
      01-09-2023, 03:10 PM

    ad_right_rmr

    Collapse
    Working...
    X