Announcement

Collapse

Welcome to the New Seqanswers!

Welcome to the new Seqanswers! We'd love your feedback, please post any you have to this topic: New Seqanswers Feedback.
See more
See less

Default Blasting an unknown protein with a predicted pattern

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Default Blasting an unknown protein with a predicted pattern

    Hello,

    I want to blast a certain pattern that I think exist in my protein. I know the organism where the protein is expressed, but I don't know the identity or the sequence of the protein. I also have an idea about the total length of the protein and where my pattern of interest might lie.

    I looked into phi-blast but it requires that I provide a sequence! myloweslife Can I provide a sequence made up of wild cards corresponding to the length of my protein? How to restrict the pattern searching to a certain location in the sequence?
    Last edited by jekslein; 04-24-2020, 08:28 AM. Reason: spelling

  • #2
    how to set the input sequence?

    Comment

    Working...
    X