vcf to gvf conversion

[sanjeevksh]

Dear All,
Is there any tool available to convert vcf file to gvf file?
Regards,

[Genos]

it's impossible.

If the vcf file only have filtered variant information, you don't have enough information to generate a gvcf file that covers all loci in the genome.

[dan]

Hi,

I also have a 'genomic VCF', that /does/ cover all loci in the genome... Is it still impossible?


Thanks,

[Medhat]

http://www.yandell-lab.org/software/vaast.html

have such tool

[dan]

Which?
http://www.yandell-lab.org/software/index.html

[Medhat]

Which?
http://www.yandell-lab.org/software/index.html

this one VAAST

[sanjeevksh]

Thanks for the replies. However, I was looking for a vcf to gvf converter and not to gvcf. I found very useful set of scripts located here: https://github.com/cfljam/galaxy-pcr-markers

Regards,