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The two main programs people use for SNP detection are samtools and GATK. I'd start with reading the manuals for those. -
Thank you very much.
It helped a lot.
Next I wanted to do is "to identify polymorphisms in arabidopsis genome" and I have paired end DNA sequences. any hint about where to start?Leave a comment:
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There is a tutorial for the analysis of RNA-seq data:
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Watch some tutorial videos at Galaxy:
Or, if you're comfortable with the command line, jump right in with something like Tophat.Leave a comment:
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Maybe you could begin with trying some align softwares, such as BWALeave a comment:
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New to RNAseq
Hello
I am new to RNAseq analysis.
Jut got my sequences and I want to start.
I want to allign the reads to reference transcriptome.
Any guidelines or help for a beginner.
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Long-Read Sequencing
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