well we did a testing run this week on titanium.
atm i am still struggling with the basecalling step, for some reason it is not starting.
Image analysis was already done and i want to do signalprocessing, so i use
runAnalysisPipe --pipe=signalProcessing.xml --reg 1-4 D_2009_06_19_11_45_49_FLX11080450_fullProcessingAmplicons_ChIP_imageProcessingOnly
but all it get is a "output will appear in xxx" and i get a tmp file with lots of commandos in (gsRunProcessor etc) but cpu use is 0%. Will it start doing something? or is something wrong?
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