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Finding Raw 454 Data

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SEQanswers June Challenge Has Begun!

The competition has begun! We're giving away a $50 Amazon gift card to the member who answers the most questions on our site during the month. We want to encourage our community members to share their knowledge and help each other out by answering questions related to sequencing technologies, genomics, and bioinformatics. The competition is open to all members of the site, and the winner will be announced at the beginning of July. Best of luck!

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  • Finding Raw 454 Data

    Is there any repository where I can download raw 454 Data?

    I am aware of NCBI - SRA. But it comes in forms of FASTQ.
    It does not suits my need for assessing insertion and deletion.
    For they cannot be accounted based on the quality score only(?)

  • #2
    The SRA also allows you to download sff files...

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    • #3
      Originally posted by flxlex View Post
      The SRA also allows you to download sff files...
      Nope, not anymore. They removed it since a few months.

      In the case of 454 paired-end data that's utterly bad as the FASTQ files one can download are riddled over and over with linkers. At least the data sets I looked at.

      Been a long time since I wanted to write them about that ... I just don't find the time.

      B.

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      • #4
        Some of the in progress projects at the Sanger Institute make raw SFF files available.

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