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  • Finding Raw 454 Data

    Is there any repository where I can download raw 454 Data?

    I am aware of NCBI - SRA. But it comes in forms of FASTQ.
    It does not suits my need for assessing insertion and deletion.
    For they cannot be accounted based on the quality score only(?)

  • #2
    The SRA also allows you to download sff files...

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    • #3
      Originally posted by flxlex View Post
      The SRA also allows you to download sff files...
      Nope, not anymore. They removed it since a few months.

      In the case of 454 paired-end data that's utterly bad as the FASTQ files one can download are riddled over and over with linkers. At least the data sets I looked at.

      Been a long time since I wanted to write them about that ... I just don't find the time.

      B.

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      • #4
        Some of the in progress projects at the Sanger Institute make raw SFF files available.

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